PH01001310G0310's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT1G72770 : 7.10E-70
Blast annotation: HYPERSENSITIVE TO ABA1
2.Location
Scaffold: PH01001310
Strand: +
| Region | Start | End |
| gene | 292727 | 295631 |
| mRNA | 292727 | 295631 |
| exon | 292727 | 293099 |
| exon | 293152 | 293392 |
| exon | 294293 | 294650 |
| exon | 294792 | 295163 |
| exon | 295273 | 295631 |
| CDS | 292955 | 293099 |
| CDS | 293152 | 293392 |
| CDS | 294293 | 294650 |
| CDS | 294792 | 295163 |
| CDS | 295273 | 295401 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000324 | pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process GT8 GlycosylTransferases pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 234 | 408 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | protein phosphatase 2C [EC:3.1.3.16] | ko04075 | K14497 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004722 | protein serine/threonine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.