PH01001316G0020's details annotation
1.Annotation
ICBR annotation: OsSPL9 - SBP-box gene family member, expressed
Blast result AT5G18830 : 4.00E-133
Blast annotation: squamosa promoter binding protein-like 7
2.Location
Scaffold: PH01001316
Strand: -
| Region | Start | End |
| gene | 5985 | 15805 |
| mRNA | 5985 | 15805 |
| exon | 5985 | 6324 |
| exon | 6487 | 6550 |
| exon | 7571 | 8125 |
| exon | 9155 | 9329 |
| exon | 10346 | 10481 |
| exon | 10993 | 11110 |
| exon | 11403 | 11510 |
| exon | 11602 | 11676 |
| exon | 11814 | 12067 |
| exon | 13273 | 13445 |
| exon | 14560 | 15805 |
| CDS | 6221 | 6324 |
| CDS | 6487 | 6550 |
| CDS | 7571 | 8125 |
| CDS | 9155 | 9329 |
| CDS | 10346 | 10481 |
| CDS | 10993 | 11110 |
| CDS | 11403 | 11510 |
| CDS | 11602 | 11676 |
| CDS | 11814 | 12067 |
| CDS | 13273 | 13445 |
| CDS | 14560 | 15224 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001848 | Valine,_leucine_and_isoleucine_biosynthesis C5-Branched_dibasic_acid_metabolism SBP Transcription_Regulator(from PlantTFDB) Pantothenate_and_CoA_biosynthesis Butanoate_metabolism branched chain family amino acid biosynthetic process, acetolactate synthase activity, |
| coexpression network | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis C5-Branched_dibasic_acid_metabolism branched chain family amino acid biosynthetic process, SBP Transcription_Regulator(from PlantTFDB) Butanoate_metabolism Pantothenate_and_CoA_biosynthesis acetolactate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SBP |
| Transcription_Regulator(from PlantTFDB) | SBP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03110.13 | SBP | 176 | 250 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.