PH01001322G0240's details annotation
1.Annotation
ICBR annotation: glycosyltransferase, putative, expressed
Blast result AT3G18170 : 7.30E-91
Blast annotation: Glycosyltransferase family 61 protein
2.Location
Scaffold: PH01001322
Strand: +
| Region | Start | End |
| gene | 199714 | 203700 |
| mRNA | 199714 | 203700 |
| exon | 199714 | 200295 |
| exon | 200415 | 200513 |
| exon | 200618 | 200665 |
| exon | 200789 | 200911 |
| exon | 201097 | 201234 |
| exon | 201768 | 203700 |
| CDS | 200151 | 200295 |
| CDS | 200415 | 200513 |
| CDS | 200618 | 200665 |
| CDS | 200789 | 200911 |
| CDS | 201097 | 201234 |
| CDS | 201768 | 202933 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000538 | GT61 GlycosylTransferases RLK-Pelle_PERK-1 (from iTAK) GT47 GlycosylTransferases Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, response to oxidative stress, histidine_catabolic_process_to_glutamate_and_formamide |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT61 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04577.13 | DUF563 | 286 | 505 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.