PH01001338G0260's details annotation
1.Annotation
ICBR annotation: CSLC10 - cellulose synthase-like family C
Blast result AT4G07960 : 0
Blast annotation: Cellulose-synthase-like C12
2.Location
Scaffold: PH01001338
Strand: -
| Region | Start | End |
| gene | 190969 | 197007 |
| mRNA | 190969 | 197007 |
| exon | 190969 | 192227 |
| exon | 193067 | 193180 |
| exon | 193295 | 193585 |
| exon | 193673 | 193981 |
| exon | 194072 | 194397 |
| exon | 195842 | 197007 |
| CDS | 191607 | 192227 |
| CDS | 193067 | 193180 |
| CDS | 193295 | 193585 |
| CDS | 193673 | 193981 |
| CDS | 194072 | 194397 |
| CDS | 195842 | 195884 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13641.5 | Glyco_tranf_2_3 | 111 | 343 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.