PH01001340G0420's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT3G45630 : 6.00E-135
Blast annotation: RNA binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01001340
Strand: +
| Region | Start | End |
| gene | 244429 | 252089 |
| mRNA | 244429 | 252089 |
| exon | 244429 | 245427 |
| exon | 245513 | 245640 |
| exon | 245785 | 245977 |
| exon | 246075 | 246187 |
| exon | 247257 | 247340 |
| exon | 247416 | 247464 |
| exon | 247551 | 247642 |
| exon | 247958 | 248087 |
| exon | 248249 | 248325 |
| exon | 248397 | 250081 |
| exon | 250426 | 250710 |
| exon | 250793 | 252089 |
| CDS | 245329 | 245427 |
| CDS | 245513 | 245640 |
| CDS | 245785 | 245977 |
| CDS | 246075 | 246187 |
| CDS | 247257 | 247340 |
| CDS | 247416 | 247464 |
| CDS | 247551 | 247642 |
| CDS | 247958 | 248087 |
| CDS | 248249 | 248325 |
| CDS | 248397 | 250081 |
| CDS | 250426 | 250710 |
| CDS | 250793 | 251334 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000911 | intracellular, Ribosome translation, PHD Transcription_Regulator(from iTAK) structural constituent of ribosome, protein import into nucleus, |
| coexpression network | CFinderM000973 | STE_STE11 (from iTAK) protein import into nucleus, RNA_degradation phospholipid transport, |
| coexpression network | CFinderM001828 | ARID Transcription_Regulator(from iTAK) ion transport, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14570.5 | zf-RING_4 | 11 | 63 |
| PF00076.21 | RRM_1 | 128 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 4 [EC:6.3.2.1] | ko03018 | K10643 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.