Annotation of co-expression genes

PH01001344G0180's details annotation

1.Annotation

ICBR annotation: CSLF6 - cellulose synthase-like family F

Blast result AT5G16910 : 4.20E-94
Blast annotation: cellulose-synthase like D2

2.Location

Scaffold: PH01001344
Strand: +

RegionStartEnd
gene161642166117
mRNA161642166117
exon161642163180
exon163842164152
exon164692166117
CDS163097163180
CDS163842164152
CDS164692165685

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000013cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
coexpression networkCFinderM000782cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
chaperone binding,
AP2/ERF-ERF Transcription_Regulator(from iTAK)
ERF Transcription_Regulator(from PlantTFDB)
integral to membrane,
membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03552.13Cellulose_synt129428

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane
GO:0016760cellulose synthase (UDP-forming) activity
GO:0030244cellulose biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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