PH01001363G0510's details annotation
1.Annotation
ICBR annotation: guanine nucleotide exchange family protein, putative, expressed
Blast result AT1G01960 : 3.90E-82
Blast annotation: SEC7-like guanine nucleotide exchange family protein
2.Location
Scaffold: PH01001363
Strand: +
| Region | Start | End |
| gene | 316180 | 318496 |
| mRNA | 316180 | 318496 |
| exon | 316180 | 316338 |
| exon | 317239 | 318496 |
| CDS | 316273 | 316338 |
| CDS | 317239 | 318144 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001136 | regulation of ARF protein signal transduction, DNA integration, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16213.4 | DCB | 23 | 127 |
| PF12783.6 | Sec7_N | 267 | 322 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.