Annotation of co-expression genes

PH01001363G0520's details annotation

1.Annotation

ICBR annotation: guanine nucleotide exchange family protein, putative, expressed

Blast result AT3G60860 : 0.00E+00
Blast annotation: SEC7-like guanine nucleotide exchange family protein

2.Location

Scaffold: PH01001363
Strand: +

RegionStartEnd
gene322272329407
mRNA322272329407
exon322272322944
exon323098323520
exon323590323876
exon324039324312
exon324879325357
exon325471325792
exon325898326276
exon326384327069
exon327790329407
CDS322600322944
CDS323098323520
CDS323590323876
CDS324039324312
CDS324879325357
CDS325471325792
CDS325898326276
CDS326384327069
CDS327790328398

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001136regulation of ARF protein signal transduction,
DNA integration,
ARF guanyl-nucleotide exchange factor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01369.19Sec7111292
PF09324.9DUF1981650732
PF16206.4Mon2_C829891

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005086ARF guanyl-nucleotide exchange factor activity
GO:0005488binding
GO:0032012regulation of ARF protein signal transduction

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.