Gene details

Annotation of co-expression genes

PH01001366G0330's details annotation

1.Annotation

ICBR annotation: 40S ribosomal protein S9-2, putative, expressed

Blast result AT5G39850 : 3.40E-86
Blast annotation: Ribosomal protein S4

2.Location

Scaffold: PH01001366
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000525	Ribosome structural constituent of ribosome, intracellular, translation, rRNA binding, small ribosomal subunit, RNA binding, Ribosome translational elongation,
coexpression network	CFinderM001233	Ribosome translation, structural constituent of ribosome, intracellular, Ribosome mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), ATP synthesis coupled proton transport, small ribosomal subunit, rRNA binding, hydrogen ion transmembrane transporter activity, Oxidative_phosphorylation

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	small subunit ribosomal protein S9e	ko03011	K02997

10.Gene Ontology

GO Accession	GO Annotation
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0006412	translation
GO:0015935	small ribosomal subunit
GO:0019843	rRNA binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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