|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Ribosome | 3.59E-07 | KEGG | | translation, | 9.31E-07 | GO:0006412 | | structural constituent of ribosome, | 4.56E-06 | GO:0003735 | | intracellular, | 3.26E-05 | GO:0005622 | | Ribosome | 0.000118671 | KEGG | | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), | 0.004685595 | GO:0000276 | | ATP synthesis coupled proton transport, | 0.00981978 | GO:0015986 | | small ribosomal subunit, | 0.013249945 | GO:0015935 | | rRNA binding, | 0.027527629 | GO:0019843 | | hydrogen ion transmembrane transporter activity, | 0.029335285 | GO:0015078 | | Oxidative_phosphorylation | 0.035928121 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000595G0820 | Ribosomal protein L14 | AT2G20450 (1.80E-60) | | PH01000948G0110 | Zinc finger C-x8-C-x5-C-x3-H type family protein | AT1G21580 (1.00E-121) | | PH01001366G0330 | Ribosomal protein S4 | AT5G39850 (3.40E-86) | | PH01001378G0460 | Mitochondrial ATP synthase subunit G protein | AT4G29480 (1.30E-50) | | PH01001785G0100 | Ribosomal protein S11 family protein | AT3G52580 (1.80E-60) | | PH01002260G0290 | Ribosomal protein S8e family protein | AT5G59240 (1.10E-95) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000173 | response to oxidative stress,
peroxidase activity,
heme binding,
oxidation-reduction process,
Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Methane_metabolism
| details | | CFinderM000175 | Ribosome
translation,
Ribosome
small ribosomal subunit,
structural constituent of ribosome,
intracellular,
eukaryotic translation elongation factor 1 complex,
translational elongation,
translation elongation factor activity,
| details | | CFinderM000505 | Phagosome
regulation of actin filament polymerization,
cytoskeleton,
GRAS Transcription_Regulator(from PlantTFDB)
Rho GDP-dissociation inhibitor activity,
| details | | CFinderM000519 | LIM Transcription_Regulator(from iTAK)
mitochondrial inner membrane,
| details | | CFinderM000525 | Ribosome
structural constituent of ribosome,
intracellular,
translation,
rRNA binding,
small ribosomal subunit,
RNA binding,
Ribosome
translational elongation,
| details | | CFinderM000910 | translation,
phosphopyruvate hydratase complex,
Ribosome
intracellular,
small ribosomal subunit,
phosphopyruvate hydratase activity,
structural constituent of ribosome,
glycolysis,
Methane_metabolism
RNA_degradation
Glycolysis_/_Gluconeogenesis
| details | | CFinderM001606 | LIM Transcription_Regulator(from iTAK)
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
proton-transporting two-sector ATPase complex, catalytic domain,
proton-transporting ATP synthase complex, catalytic core F(1),
ATP biosynthetic process,
ATP metabolic process,
ATP_catabolic_process
actin cytoskeleton organization,
proton transport,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
| details |
4.Expression profilings |
