PH01001373G0260's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G32810 : 2.40E-21
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01001373
Strand: -
| Region | Start | End |
| gene | 302976 | 308379 |
| mRNA | 302976 | 308379 |
| exon | 302976 | 303688 |
| exon | 304418 | 304540 |
| exon | 304623 | 304693 |
| exon | 304765 | 305017 |
| exon | 305368 | 306302 |
| exon | 306409 | 306478 |
| exon | 307893 | 308379 |
| CDS | 303317 | 303688 |
| CDS | 304418 | 304540 |
| CDS | 304623 | 304693 |
| CDS | 304765 | 305017 |
| CDS | 305368 | 306302 |
| CDS | 306409 | 306478 |
| CDS | 307893 | 308012 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000945 | Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.