Annotation of co-expression genes

PH01001387G0440's details annotation

1.Annotation

ICBR annotation: serine/threonine-protein kinase receptor precursor, putative, expressed

Blast result AT1G61610 : 4.00E-132
Blast annotation: S-locus lectin protein kinase family protein

2.Location

Scaffold: PH01001387
Strand: -

RegionStartEnd
gene322260332364
mRNA322260332364
exon322260323328
exon323415323565
exon323645323882
exon323966324176
exon324258324478
exon325014325343
exon325558325627
exon325933326062
exon326109326243
exon327667327904
exon327988328198
exon328280328500
exon329500329795
exon330642330725
exon331122332364
CDS323020323328
CDS323415323565
CDS323645323882
CDS323966324176
CDS324258324478
CDS325014325343
CDS325558325627
CDS325933326062
CDS326109326243
CDS327667327904
CDS327988328198
CDS328280328500
CDS329500329795
CDS330642330725
CDS331122331786

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000850RLK-Pelle_DLSV (from iTAK)
coexpression networkCFinderM001237
coexpression networkCFinderM001296CMGC_DYRK-PRP4 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
recognition of pollen,
protein phosphorylation,
coexpression networkCFinderM001328GT32 GlycosylTransferases
Golgi stack,
CMGC_SRPK (from iTAK)
coexpression networkCFinderM001704RLK-Pelle_DLSV (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01453.23B_lectin78189
PF00954.19S_locus_glycop251343
PF07714.16Pkinase_Tyr409566
PF08276.10PAN_2710774
PF07714.16Pkinase_Tyr8541114

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0048544recognition of pollen

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.