PH01001389G0360's details annotation
1.Annotation
ICBR annotation: LSD1 zinc finger domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001389
Strand: +
| Region | Start | End |
| gene | 215949 | 219142 |
| mRNA | 215949 | 219142 |
| exon | 215949 | 216188 |
| exon | 217457 | 217584 |
| exon | 217614 | 217696 |
| exon | 217991 | 218062 |
| exon | 218156 | 219142 |
| CDS | 216139 | 216188 |
| CDS | 217457 | 217584 |
| CDS | 217614 | 217696 |
| CDS | 217991 | 218062 |
| CDS | 218156 | 218197 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000336 | C2C2-LSD Transcription_Regulator(from iTAK) LSD Transcription_Regulator(from PlantTFDB) cellulose biosynthetic process, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001011 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) protein folding, peptidyl-prolyl cis-trans isomerase activity, hydrolase_activity,_acting_on_acid_anhydrides |
| coexpression network | CFinderM001117 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001292 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, endoplasmic reticulum, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2C2-LSD |
| Transcription_Regulator(from PlantTFDB) | LSD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06943.11 | zf-LSD1 | 68 | 87 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.