PH01001453G0210's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT3G52060 : 6.60E-80
Blast annotation: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
2.Location
Scaffold: PH01001453
Strand: +
| Region | Start | End |
| gene | 125945 | 128312 |
| mRNA | 125945 | 128312 |
| exon | 125945 | 127604 |
| exon | 127724 | 128312 |
| CDS | 126952 | 127604 |
| CDS | 127724 | 128072 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001304 | nucleoside-triphosphatase activity, ATPase activity, coupled to transmembrane movement of substances, GT47 GlycosylTransferases RLK-Pelle_CR4L (from iTAK) ABC_transporters ATPase activity, ATP binding, nucleotide binding, SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02485.20 | Branch | 83 | 194 |
| PF02485.20 | Branch | 217 | 299 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008375 | acetylglucosaminyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.