PH01001487G0040's details annotation
1.Annotation
ICBR annotation: aminopeptidase, putative, expressed
Blast result AT1G63770 : 0.00E+00
Blast annotation: Peptidase M1 family protein
2.Location
Scaffold: PH01001487
Strand: -
| Region | Start | End |
| gene | 36223 | 47547 |
| mRNA | 36223 | 47547 |
| exon | 36223 | 36411 |
| exon | 36540 | 36611 |
| exon | 36730 | 36846 |
| exon | 36944 | 37054 |
| exon | 37178 | 37353 |
| exon | 37444 | 37525 |
| exon | 37895 | 38041 |
| exon | 38117 | 38255 |
| exon | 38333 | 38481 |
| exon | 39781 | 39964 |
| exon | 40218 | 40327 |
| exon | 40967 | 41023 |
| exon | 41194 | 41198 |
| exon | 41342 | 41360 |
| exon | 41628 | 41708 |
| exon | 41788 | 41851 |
| exon | 42169 | 42194 |
| exon | 42471 | 42498 |
| exon | 42679 | 42740 |
| exon | 42850 | 43062 |
| exon | 43153 | 43260 |
| exon | 43484 | 43558 |
| exon | 43667 | 43780 |
| exon | 44399 | 44475 |
| exon | 44684 | 44759 |
| exon | 44973 | 45113 |
| exon | 47369 | 47547 |
| CDS | 36331 | 36411 |
| CDS | 36540 | 36611 |
| CDS | 36730 | 36846 |
| CDS | 36944 | 37054 |
| CDS | 37178 | 37353 |
| CDS | 37444 | 37525 |
| CDS | 37895 | 38041 |
| CDS | 38117 | 38255 |
| CDS | 38333 | 38481 |
| CDS | 39781 | 39964 |
| CDS | 40218 | 40327 |
| CDS | 40967 | 41023 |
| CDS | 41194 | 41198 |
| CDS | 41342 | 41360 |
| CDS | 41628 | 41708 |
| CDS | 41788 | 41851 |
| CDS | 42169 | 42194 |
| CDS | 42471 | 42498 |
| CDS | 42679 | 42740 |
| CDS | 42850 | 43062 |
| CDS | 43153 | 43260 |
| CDS | 43484 | 43558 |
| CDS | 43667 | 43780 |
| CDS | 44399 | 44475 |
| CDS | 44684 | 44759 |
| CDS | 44973 | 45113 |
| CDS | 47369 | 47476 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001087 | peroxiredoxin activity, antioxidant activity, Glutathione_metabolism metallopeptidase activity, |
| coexpression network | CFinderM001499 | Glutathione_metabolism metallopeptidase activity, ionotropic glutamate receptor activity, extracellular-glutamate-gated ion channel activity, outer membrane-bounded periplasmic space, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01433.19 | Peptidase_M1 | 273 | 334 |
| PF01433.19 | Peptidase_M1 | 335 | 453 |
| PF11940.7 | DUF3458 | 456 | 546 |
| PF17432.1 | DUF3458_C | 551 | 872 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glutathione metabolism | aminopeptidase N [EC:3.4.11.2] | ko00480 | K01256 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008237 | metallopeptidase activity |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.