PH01001491G0170's details annotation
1.Annotation
ICBR annotation: mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
Blast result AT5G55510 : 4.30E-20
Blast annotation: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
2.Location
Scaffold: PH01001491
Strand: +
| Region | Start | End |
| gene | 128998 | 133972 |
| mRNA | 128998 | 133972 |
| exon | 128998 | 130031 |
| exon | 130401 | 130504 |
| exon | 130812 | 130865 |
| exon | 133440 | 133972 |
| CDS | 129907 | 130031 |
| CDS | 130401 | 130504 |
| CDS | 130812 | 130865 |
| CDS | 133440 | 133660 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000680 | protein arginylation, mitochondrial matrix, arginyltransferase activity, RNA methyltransferase activity, RNA processing, |
| coexpression network | CFinderM000681 | protein arginylation, GH47 Glycoside_Hydrolases arginyltransferase activity, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.