Annotation of co-expression genes

PH01001493G0410's details annotation

1.Annotation

ICBR annotation: beta-galactosidase precursor, putative

Blast result AT1G31740 : 2.40E-54
Blast annotation: beta-galactosidase 15

2.Location

Scaffold: PH01001493
Strand: -

RegionStartEnd
gene252675263835
mRNA252675263835
exon252675252844
exon252937252998
exon253283253371
exon253478253630
exon253719253811
exon253914253980
exon255014255205
exon255307255392
exon256060256276
exon256732256784
exon257038257103
exon259013259171
exon259272259484
exon259557259603
exon261495261620
exon263255263360
exon263474263569
exon263629263835
CDS252750252844
CDS252937252998
CDS253283253371
CDS253478253630
CDS253719253811
CDS253914253980
CDS255014255205
CDS255307255392
CDS256060256276
CDS256732256784
CDS257038257103
CDS259013259171
CDS259272259484
CDS259557259603
CDS261495261620
CDS263255263360
CDS263474263569
CDS263629263784

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000687Ubiquitin_mediated_proteolysis
GH35 Glycoside_Hydrolases

cullin-RING ubiquitin ligase complex,
Nucleotide_excision_repair
metallocarboxypeptidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH35

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01301.18Glyco_hydro_353093
PF01301.18Glyco_hydro_35507640

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.