PH01001508G0150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G19490 : 3.00E-149
Blast annotation: VPS54
2.Location
Scaffold: PH01001508
Strand: -
| Region | Start | End |
| gene | 159332 | 168411 |
| mRNA | 159332 | 168411 |
| exon | 159332 | 160161 |
| exon | 160301 | 160429 |
| exon | 160883 | 160950 |
| exon | 161381 | 161542 |
| exon | 161665 | 161744 |
| exon | 164865 | 164946 |
| exon | 165341 | 165494 |
| exon | 165732 | 166078 |
| exon | 166891 | 166974 |
| exon | 167070 | 167241 |
| exon | 167433 | 168411 |
| CDS | 160023 | 160161 |
| CDS | 160301 | 160429 |
| CDS | 160883 | 160950 |
| CDS | 161381 | 161542 |
| CDS | 161665 | 161744 |
| CDS | 164865 | 164946 |
| CDS | 165341 | 165494 |
| CDS | 165732 | 166078 |
| CDS | 166891 | 166974 |
| CDS | 167070 | 167241 |
| CDS | 167433 | 167641 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001829 | retrograde transport, endosome to Golgi, proton transport, hydrogen-translocating pyrophosphatase activity, inorganic diphosphatase activity, Ether_lipid_metabolism WRKY Transcription_Regulator(from PlantTFDB) Glycerophospholipid_metabolism Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07928.11 | Vps54 | 266 | 396 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0042147 | retrograde transport, endosome to Golgi |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.