Annotation of co-expression genes

PH01001510G0330's details annotation

1.Annotation

ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed

Blast result AT2G23780 : 1.80E-27
Blast annotation: RING/U-box superfamily protein

2.Location

Scaffold: PH01001510
Strand: -

RegionStartEnd
gene243450245235
mRNA243450245235
exon243450245235
CDS243501244535

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000418tRNA aminoacylation for protein translation,
coexpression networkCFinderM000575Protein_processing_in_endoplasmic_reticulum
zinc ion binding,
coexpression networkCFinderM000656RLK-Pelle_RLCK-VIIa-2 (from iTAK)
protein binding,
zinc ion binding,
Protein_processing_in_endoplasmic_reticulum
coexpression networkCFinderM000999exocytosis,
SBP Transcription_Regulator(from PlantTFDB)
exocyst,
Protein_processing_in_endoplasmic_reticulum
coexpression networkCFinderM001023vesicle docking involved in exocytosis,
vesicle-mediated transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13923.5zf-C3HC4_25697

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumE3 ubiquitin-protein ligase RNF5 [EC:6.3.2.19]ko04141K10666

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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