PH01001517G0230's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT1G32150 : 3.40E-69
Blast annotation: basic region/leucine zipper transcription factor 68
2.Location
Scaffold: PH01001517
Strand: -
| Region | Start | End |
| gene | 180912 | 189362 |
| mRNA | 180912 | 189362 |
| exon | 180912 | 181311 |
| exon | 181393 | 181518 |
| exon | 181607 | 181684 |
| exon | 182463 | 182611 |
| exon | 182696 | 182735 |
| exon | 183103 | 183157 |
| exon | 183261 | 183442 |
| exon | 183514 | 183573 |
| exon | 183669 | 183755 |
| exon | 185343 | 185417 |
| exon | 185720 | 185806 |
| exon | 186204 | 186278 |
| exon | 186437 | 186496 |
| exon | 188052 | 189362 |
| CDS | 181213 | 181311 |
| CDS | 181393 | 181518 |
| CDS | 181607 | 181684 |
| CDS | 182463 | 182611 |
| CDS | 182696 | 182735 |
| CDS | 183103 | 183157 |
| CDS | 183261 | 183442 |
| CDS | 183514 | 183573 |
| CDS | 183669 | 183755 |
| CDS | 185343 | 185417 |
| CDS | 185720 | 185806 |
| CDS | 186204 | 186278 |
| CDS | 186437 | 186496 |
| CDS | 188052 | 188372 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000592 | transcription, DNA-dependent, cytoplasm, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07777.10 | MFMR | 130 | 196 |
| PF07777.10 | MFMR | 205 | 234 |
| PF16596.4 | MFMR_assoc D | 276 | 398 |
| PF00170.20 | bZIP_1 | 399 | 461 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.