PH01001523G0080's details annotation
1.Annotation
ICBR annotation: AT-rich interaction region, putative, expressed
Blast result AT5G17620 : 5.40E-11
Blast annotation: -
2.Location
Scaffold: PH01001523
Strand: +
| Region | Start | End |
| gene | 49051 | 55020 |
| mRNA | 49051 | 55020 |
| exon | 49051 | 49254 |
| exon | 49710 | 49756 |
| exon | 52730 | 52748 |
| exon | 52793 | 52939 |
| exon | 53859 | 54041 |
| exon | 54164 | 55020 |
| CDS | 49156 | 49254 |
| CDS | 49710 | 49756 |
| CDS | 52730 | 52748 |
| CDS | 52793 | 52939 |
| CDS | 53859 | 54041 |
| CDS | 54164 | 54208 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
| coexpression network | CFinderM000588 | lipid catabolic process, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK) ethylene mediated signaling pathway, endoplasmic reticulum membrane, Plant_hormone_signal_transduction protein histidine kinase activity, Others Transcription_Regulator(from iTAK) two-component sensor activity, protein tyrosine kinase activity, two-component signal transduction system (phosphorelay), EIL Transcription_Regulator(from PlantTFDB) two-component response regulator activity, signal transducer activity, sulfate assimilation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06694.10 | Plant_NMP1 | 114 | 166 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.