PH01001523G0110's details annotation
1.Annotation
ICBR annotation: SAM dependent carboxyl methyltransferase, putative, expressed
Blast result AT5G04370 : 1.10E-67
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01001523
Strand: +
| Region | Start | End |
| gene | 77435 | 79783 |
| mRNA | 77435 | 79783 |
| exon | 77435 | 77643 |
| exon | 78081 | 78491 |
| exon | 78642 | 78914 |
| exon | 79226 | 79783 |
| CDS | 77569 | 77643 |
| CDS | 78081 | 78491 |
| CDS | 78642 | 78914 |
| CDS | 79226 | 79588 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK) ethylene mediated signaling pathway, endoplasmic reticulum membrane, Plant_hormone_signal_transduction protein histidine kinase activity, Others Transcription_Regulator(from iTAK) two-component sensor activity, protein tyrosine kinase activity, two-component signal transduction system (phosphorelay), EIL Transcription_Regulator(from PlantTFDB) two-component response regulator activity, signal transducer activity, sulfate assimilation, |
| coexpression network | CFinderM001043 | lipoxygenase activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, Linoleic_acid_metabolism iron ion binding, metal ion binding, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03492.14 | Methyltransf_7 | 39 | 371 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.