PH01001528G0240's details annotation
1.Annotation
ICBR annotation: expansin precursor, putative, expressed
Blast result AT2G39700 : 1.00E-125
Blast annotation: expansin A4
2.Location
Scaffold: PH01001528
Strand: -
| Region | Start | End |
| gene | 157265 | 159820 |
| mRNA | 157265 | 159820 |
| exon | 157265 | 157658 |
| exon | 159129 | 159453 |
| exon | 159543 | 159820 |
| CDS | 157349 | 157658 |
| CDS | 159129 | 159453 |
| CDS | 159543 | 159690 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03330.17 | DPBB_1 | 68 | 156 |
| PF01357.20 | Pollen_allerg_1 | 167 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005576 | extracellular region |
| GO:0009664 | plant-type cell wall organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.