Annotation of co-expression genes

PH01001580G0280's details annotation

1.Annotation

ICBR annotation: Myosin head domain containing protein, expressed

Blast result AT1G04160 : 0.00E+00
Blast annotation: myosin XI B

2.Location

Scaffold: PH01001580
Strand: -

RegionStartEnd
gene181906198553
mRNA181906198553
exon181906182336
exon182440182522
exon182796182876
exon183015183071
exon183364183463
exon183543183613
exon183688183816
exon183940184125
exon184218184403
exon185144185314
exon185385185468
exon185563185601
exon185702185816
exon185935186074
exon186289186501
exon187924188022
exon188346188465
exon188856189061
exon189163189340
exon189831189891
exon190894190901
exon191141191201
exon191309191418
exon191507191638
exon191983192109
exon192213192250
exon193055193156
exon193546193606
exon194128194229
exon194315194461
exon194540194676
exon194779194928
exon195621195711
exon195804195862
exon195955196111
exon196247196392
exon196493196636
exon196818196946
exon197243198553
CDS182222182336
CDS182440182522
CDS182796182876
CDS183015183071
CDS183364183463
CDS183543183613
CDS183688183816
CDS183940184125
CDS184218184403
CDS185144185314
CDS185385185468
CDS185563185601
CDS185702185816
CDS185935186074
CDS186289186501
CDS187924188022
CDS188346188465
CDS188856189061
CDS189163189340
CDS189831189891
CDS190894190901
CDS191141191201
CDS191309191418
CDS191507191638
CDS191983192109
CDS192213192250
CDS193055193156
CDS193546193606
CDS194128194229
CDS194315194461
CDS194540194676
CDS194779194928
CDS195621195711
CDS195804195862
CDS195955196111
CDS196247196392
CDS196493196636
CDS196818196946
CDS197243197248

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001485HSF Transcription_Regulator(from PlantTFDB)
myosin complex,
tRNA aminoacylation for protein translation,
coexpression networkCFinderM001775myosin complex,
TBP-class_protein_binding
Fructose_and_mannose_metabolism
Basal_transcription_factors
Amino_sugar_and_nucleotide_sugar_metabolism
motor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02736.18Myosin_N1249
PF00063.20Myosin_head65245
PF00063.20Myosin_head246532
PF00063.20Myosin_head533665
PF00612.26IQ704724
PF00612.26IQ730748
PF00612.26IQ755771
PF00612.26IQ777792
PF00612.26IQ801820
PF01843.18DIL12861371

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003774motor activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0016459myosin complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.