PH01001592G0110's details annotation
1.Annotation
ICBR annotation: tRNA synthetase class II core domain containing protein, expressed
Blast result AT3G02760 : 0.00E+00
Blast annotation: Class II aaRS and biotin synthetases superfamily protein
2.Location
Scaffold: PH01001592
Strand: +
| Region | Start | End |
| gene | 64640 | 68961 |
| mRNA | 64640 | 68961 |
| exon | 64640 | 65002 |
| exon | 65247 | 66131 |
| exon | 66301 | 66480 |
| exon | 66723 | 66926 |
| exon | 67311 | 67466 |
| exon | 67585 | 67866 |
| exon | 68233 | 68373 |
| exon | 68458 | 68961 |
| CDS | 64796 | 65002 |
| CDS | 65247 | 66131 |
| CDS | 66301 | 66480 |
| CDS | 66723 | 66926 |
| CDS | 67311 | 67466 |
| CDS | 67585 | 67866 |
| CDS | 68233 | 68373 |
| CDS | 68458 | 68760 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000677 | UMP biosynthetic process, 'de novo' pyrimidine base biosynthetic process, purine ribonucleotide biosynthetic process, histidyl-tRNA aminoacylation, Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity, translation_initiation_factor_binding N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, histidine-tRNA ligase activity, nucleotide-excision repair, proteolysis, ATP-dependent DNA helicase activity, translational initiation, nucleobase-containing compound metabolic process, RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13393.5 | tRNA-synt_His | 365 | 672 |
| PF03129.19 | HGTP_anticodon | 696 | 780 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Aminoacyl-tRNA biosynthesis | histidyl-tRNA synthetase [EC:6.1.1.21] | ko00970 | K01892 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004821 | histidine-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006427 | histidyl-tRNA aminoacylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.