Annotation of co-expression genes

PH01001596G0080's details annotation

1.Annotation

ICBR annotation: crooked neck, putative, expressed

Blast result AT5G41770 : 0.00E+00
Blast annotation: crooked neck protein, putative / cell cycle protein, putative

2.Location

Scaffold: PH01001596
Strand: +

RegionStartEnd
gene6551968973
mRNA6551968973
exon6551968090
exon6841068973
CDS6646268090
CDS6841068628

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000408Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
coexpression networkCFinderM000745GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
coexpression networkCFinderM001095protein binding,
RLK-Pelle_LRR-VI-2 (from iTAK)
Spliceosome
RNA processing,
coexpression networkCFinderM001098intracellular,
Spliceosome
coexpression networkCFinderM001250Endocytosis
cysteine-type endopeptidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02184.15HAT122149
PF02184.15HAT221249

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomecrooked neckko03041K12869

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005622intracellular
GO:0006396RNA processing

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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