|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | protein binding, | 0.000131592 | GO:0005515 | | RLK-Pelle_LRR-VI-2 (from iTAK) | 0.003931966 | GFam | | Spliceosome | 0.041262912 | KEGG | | RNA processing, | 0.044353916 | GO:0006396 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000385G0120 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT1G31840 (9.50E-79) | | PH01000778G0750 | Leucine-rich repeat protein kinase family protein | AT5G45840 (1.00E-133) | | PH01000901G0320 | RING/U-box superfamily protein | AT5G58787 (2.30E-63) | | PH01001596G0080 | crooked neck protein, putative / cell cycle protein, putative | AT5G41770 (0.00E+00) | | PH01002172G0330 | Pentatricopeptide repeat (PPR) superfamily protein | AT3G22670 (2.00E-117) | | PH01002528G0300 | RING/U-box superfamily protein | AT5G01960 (7.10E-66) | | PH01004864G0030 | Pentatricopeptide repeat (PPR) superfamily protein | AT3G25970 (4.00E-159) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
| details | | CFinderM000746 | CMGC_DYRK-YAK (from iTAK)
TKL-Pl-6 (from iTAK)
| details | | CFinderM001098 | intracellular,
Spliceosome
| details | | CFinderM001109 | RLK-Pelle_LRR-VI-2 (from iTAK)
regulation of Rab GTPase activity,
Spliceosome
| details | | CFinderM001250 | Endocytosis
cysteine-type endopeptidase activity,
| details | | CFinderM001511 | nuclear pore,
nucleocytoplasmic transport,
RNA processing,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
| details | | CFinderM001544 | RLK-Pelle_LRR-VI-2 (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
nuclear pore,
RNA_transport
| details |
4.Expression profilings |
