PH01001650G0180's details annotation
1.Annotation
ICBR annotation: acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed
Blast result AT3G50690 : 6.50E-58
Blast annotation: Leucine-rich repeat (LRR) family protein
2.Location
Scaffold: PH01001650
Strand: +
| Region | Start | End |
| gene | 121697 | 127464 |
| mRNA | 121697 | 127464 |
| exon | 121697 | 123350 |
| exon | 125961 | 127464 |
| CDS | 122178 | 123350 |
| CDS | 125961 | 126215 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000206 | mitochondrial inner membrane presequence translocase complex, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, Others Transcription_Regulator(from iTAK) two-component response regulator activity, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM000990 | MBF1 Transcription_Regulator(from iTAK) RNA_degradation |
| coexpression network | CFinderM001063 | CMGC_CDK-CDK8 (from iTAK) protein arginylation, arginyltransferase activity, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14580.5 | LRR_9 | 64 | 166 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.