PH01001673G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G28200 : 1.90E-99
Blast annotation: -
2.Location
Scaffold: PH01001673
Strand: -
| Region | Start | End |
| gene | 89764 | 96829 |
| mRNA | 89764 | 96829 |
| exon | 89764 | 90027 |
| exon | 90156 | 90198 |
| exon | 90931 | 91103 |
| exon | 91435 | 91917 |
| exon | 93334 | 93990 |
| exon | 94790 | 94899 |
| exon | 95548 | 95644 |
| exon | 95962 | 96829 |
| CDS | 89938 | 90027 |
| CDS | 90156 | 90198 |
| CDS | 90931 | 91103 |
| CDS | 91435 | 91917 |
| CDS | 93334 | 93990 |
| CDS | 94790 | 94899 |
| CDS | 95548 | 95644 |
| CDS | 95962 | 96432 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000118 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08640.10 | U3_assoc_6 | 9 | 77 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.