PH01001678G0190's details annotation
1.Annotation
ICBR annotation: formin-like protein 13, putative, expressed
Blast result AT5G58160 : 2.00E-112
Blast annotation: actin binding
2.Location
Scaffold: PH01001678
Strand: -
| Region | Start | End |
| gene | 137795 | 143484 |
| mRNA | 137795 | 143484 |
| exon | 137795 | 139066 |
| exon | 139160 | 139381 |
| exon | 139791 | 140494 |
| exon | 141870 | 143484 |
| CDS | 138410 | 139066 |
| CDS | 139160 | 139381 |
| CDS | 139791 | 140494 |
| CDS | 141870 | 142074 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10409.8 | PTEN_C2 | 201 | 338 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.