PH01001693G0110's details annotation
1.Annotation
ICBR annotation: G-protein alpha subunit, putative, expressed
Blast result AT2G26300 : 4.00E-134
Blast annotation: G protein alpha subunit 1
2.Location
Scaffold: PH01001693
Strand: -
| Region | Start | End |
| gene | 47779 | 52858 |
| mRNA | 47779 | 52858 |
| exon | 47779 | 48482 |
| exon | 48604 | 48683 |
| exon | 48764 | 48823 |
| exon | 48903 | 48996 |
| exon | 49370 | 49504 |
| exon | 49669 | 49724 |
| exon | 50766 | 50867 |
| exon | 50987 | 51061 |
| exon | 51662 | 51739 |
| exon | 51887 | 51976 |
| exon | 52521 | 52858 |
| CDS | 48290 | 48482 |
| CDS | 48604 | 48683 |
| CDS | 48764 | 48823 |
| CDS | 48903 | 48996 |
| CDS | 49370 | 49504 |
| CDS | 49669 | 49724 |
| CDS | 50766 | 50867 |
| CDS | 50987 | 51061 |
| CDS | 51662 | 51739 |
| CDS | 51887 | 51976 |
| CDS | 52521 | 52583 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001483 | eukaryotic translation initiation factor 3 complex, cytoplasm, valyl-tRNA aminoacylation, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding G-protein coupled receptor signaling pathway, Aminoacyl-tRNA_biosynthesis |
| coexpression network | CFinderM001712 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), Aminoacyl-tRNA_biosynthesis ATP_catabolic_process valyl-tRNA aminoacylation, ATP biosynthetic process, ATP metabolic process, G-protein coupled receptor signaling pathway, G-protein_beta/gamma-subunit_complex_binding guanyl nucleotide binding, valine-tRNA ligase activity, aminoacyl-tRNA_editing_activity proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00503.19 | G-alpha | 21 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0004871 | signal transducer activity |
| GO:0005525 | GTP binding |
| GO:0006184 | GTP catabolic process |
| GO:0007165 | signal transduction |
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0019001 | guanyl nucleotide binding |
| GO:0031683 | G-protein beta/gamma-subunit complex binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.