PH01001707G0480's details annotation
1.Annotation
ICBR annotation: boron transporter protein, putative, expressed
Blast result AT1G15460 : 0.00E+00
Blast annotation: HCO3- transporter family
2.Location
Scaffold: PH01001707
Strand: -
| Region | Start | End |
| gene | 296033 | 304862 |
| mRNA | 296033 | 304862 |
| exon | 296033 | 296607 |
| exon | 297849 | 297919 |
| exon | 298876 | 299010 |
| exon | 299443 | 299710 |
| exon | 299868 | 299986 |
| exon | 300050 | 300190 |
| exon | 300538 | 300654 |
| exon | 300737 | 300832 |
| exon | 300945 | 301118 |
| exon | 301275 | 301441 |
| exon | 301525 | 301690 |
| exon | 301774 | 301912 |
| exon | 301999 | 302191 |
| exon | 302490 | 302572 |
| exon | 302670 | 304862 |
| CDS | 296505 | 296607 |
| CDS | 297849 | 297919 |
| CDS | 298876 | 299010 |
| CDS | 299443 | 299710 |
| CDS | 299868 | 299986 |
| CDS | 300050 | 300190 |
| CDS | 300538 | 300654 |
| CDS | 300737 | 300832 |
| CDS | 300945 | 301118 |
| CDS | 301275 | 301441 |
| CDS | 301525 | 301690 |
| CDS | 301774 | 301912 |
| CDS | 301999 | 302191 |
| CDS | 302490 | 302572 |
| CDS | 302670 | 302773 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000207 | anion transport, GT8 GlycosylTransferases RLK-Pelle_LRR-XI-1 (from iTAK) inorganic anion exchanger activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00955.20 | HCO3_cotransp | 4 | 178 |
| PF00955.20 | HCO3_cotransp | 202 | 373 |
| PF00955.20 | HCO3_cotransp | 460 | 523 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005452 | inorganic anion exchanger activity |
| GO:0006820 | anion transport |
| GO:0016020 | membrane |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.