PH01001709G0280's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001709
Strand: +
| Region | Start | End |
| gene | 163314 | 166527 |
| mRNA | 163314 | 166527 |
| exon | 163314 | 163898 |
| exon | 164014 | 164179 |
| exon | 164289 | 166527 |
| CDS | 163827 | 163898 |
| CDS | 164014 | 164179 |
| CDS | 164289 | 165949 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000364 | GRAS Transcription_Regulator(from PlantTFDB) oxygen evolving complex, phosphopyruvate hydratase complex, extrinsic to membrane, photosystem II, phosphopyruvate hydratase activity, Glycolysis_/_Gluconeogenesis Methane_metabolism RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11331.7 | zinc_ribbon_12 | 463 | 506 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.