PH01001719G0330's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT4G39840 : 6.70E-48
Blast annotation: -
2.Location
Scaffold: PH01001719
Strand: +
| Region | Start | End |
| gene | 231576 | 233239 |
| mRNA | 231576 | 233239 |
| exon | 231576 | 233239 |
| CDS | 231850 | 233199 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001202 | mediator complex, L-arabinose metabolic process, regulation of transcription from RNA polymerase II promoter, alpha-N-arabinofuranosidase activity, RNA_polymerase_II_transcription_cofactor_activity |
| coexpression network | CFinderM001586 | mediator complex, regulation of transcription from RNA polymerase II promoter, transcription, DNA-dependent, ribonucleoside_binding RNA_polymerase_II_transcription_cofactor_activity RNA_polymerase |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.