PH01001757G0240's details annotation
1.Annotation
ICBR annotation: suppressor of Mek, putative, expressed
Blast result AT5G49390 : 2.70E-26
Blast annotation: -
2.Location
Scaffold: PH01001757
Strand: -
| Region | Start | End |
| gene | 206689 | 210855 |
| mRNA | 206689 | 210855 |
| exon | 206689 | 207575 |
| exon | 207738 | 207898 |
| exon | 208510 | 208617 |
| exon | 208687 | 208818 |
| exon | 209925 | 210039 |
| exon | 210464 | 210855 |
| CDS | 207092 | 207575 |
| CDS | 207738 | 207898 |
| CDS | 208510 | 208617 |
| CDS | 208687 | 208818 |
| CDS | 209925 | 210039 |
| CDS | 210464 | 210534 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001305 | SNF2 Transcription_Regulator(from iTAK) 5'-3' exoribonuclease activity, nucleic acid binding, intracellular, large ribosomal subunit, nucleobase-containing compound metabolic process, exonuclease activity, |
| coexpression network | CFinderM001668 | poly(A)+ mRNA export from nucleus, SET Transcription_Regulator(from iTAK) histone_lysine_methylation large ribosomal subunit, nuclear pore, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.