|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SNF2 Transcription_Regulator(from iTAK) | 0.009155108 | GFam | | 5'-3' exoribonuclease activity, | 0.013964229 | GO:0004534 | | nucleic acid binding, | 0.013964229 | GO:0003676 | | intracellular, | 0.020125329 | GO:0005622 | | large ribosomal subunit, | 0.020125329 | GO:0015934 | | nucleobase-containing compound metabolic process, | 0.02969811 | GO:0006139 | | exonuclease activity, | 0.044168257 | GO:0004527 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000174G0870 | exoribonuclease 4 | AT1G54490 (0.00E+00) | | PH01000299G0470 | Ribosomal protein L1p/L10e family | AT1G08360 (1.20E-95) | | PH01000410G0760 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | AT3G54280 (0.00E+00) | | PH01000587G0520 | Protein of unknown function (DUF668) | AT1G34320 (2.00E-77) | | PH01001757G0240 | - | AT5G49390 (2.70E-26) | | PH01005189G0110 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT5G54580 (4.20E-39) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000112 | SNF2 Transcription_Regulator(from iTAK)
chromatin remodeling,
ATP-dependent chromatin remodeling,
CE8 Carbohydrate_Esterases
nucleic acid binding,
helicase activity,
5'-3' exoribonuclease activity,
nucleosome binding,
GT1 GlycosylTransferases
cell wall modification,
nucleus,
cell wall,
nucleobase-containing compound metabolic process,
exonuclease activity,
| details | | CFinderM000201 | RLK-Pelle_CrRLK1L-1 (from iTAK)
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
| details | | CFinderM000746 | CMGC_DYRK-YAK (from iTAK)
TKL-Pl-6 (from iTAK)
| details | | CFinderM000964 | intracellular,
putrescine biosynthetic process,
translation,
large ribosomal subunit,
protein-arginine_deiminase_activity
structural constituent of ribosome,
3'-5' exonuclease activity,
nucleobase-containing compound metabolic process,
cellular metabolic process,
| details | | CFinderM001668 | poly(A)+ mRNA export from nucleus,
SET Transcription_Regulator(from iTAK)
histone_lysine_methylation
large ribosomal subunit,
nuclear pore,
| details | | CFinderM001812 | intracellular transport,
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
exonuclease activity,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
| details |
4.Expression profilings |
