PH01001814G0070's details annotation
1.Annotation
ICBR annotation: glucosidase II beta subunit-like domain containing protein, expressed
Blast result AT5G35080 : 9.40E-65
Blast annotation: -
2.Location
Scaffold: PH01001814
Strand: -
| Region | Start | End |
| gene | 48853 | 52592 |
| mRNA | 48853 | 52592 |
| exon | 48853 | 49954 |
| exon | 50035 | 50141 |
| exon | 50270 | 50336 |
| exon | 50441 | 50556 |
| exon | 50861 | 50932 |
| exon | 51039 | 51239 |
| exon | 51715 | 51791 |
| exon | 52216 | 52592 |
| CDS | 49795 | 49954 |
| CDS | 50035 | 50141 |
| CDS | 50270 | 50336 |
| CDS | 50441 | 50556 |
| CDS | 50861 | 50932 |
| CDS | 51039 | 51239 |
| CDS | 51715 | 51791 |
| CDS | 52216 | 52303 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07915.12 | PRKCSH | 117 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | protein OS-9 | ko04141 | K10088 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.