PH01001821G0140's details annotation
1.Annotation
ICBR annotation: metallo-beta-lactamase family protein, putative, expressed
Blast result AT1G52160 : 0.00E+00
Blast annotation: tRNAse Z3
2.Location
Scaffold: PH01001821
Strand: -
| Region | Start | End |
| gene | 111229 | 120932 |
| mRNA | 111229 | 120932 |
| exon | 111229 | 111906 |
| exon | 112302 | 112905 |
| exon | 112996 | 113504 |
| exon | 113955 | 114005 |
| exon | 114095 | 114233 |
| exon | 114908 | 115173 |
| exon | 117149 | 117284 |
| exon | 117471 | 117712 |
| exon | 118229 | 118618 |
| exon | 119081 | 119125 |
| exon | 119696 | 119785 |
| exon | 120558 | 120932 |
| CDS | 111595 | 111906 |
| CDS | 112302 | 112905 |
| CDS | 112996 | 113504 |
| CDS | 113955 | 114005 |
| CDS | 114095 | 114233 |
| CDS | 114908 | 115173 |
| CDS | 117149 | 117284 |
| CDS | 117471 | 117712 |
| CDS | 118229 | 118618 |
| CDS | 119081 | 119125 |
| CDS | 119696 | 119785 |
| CDS | 120558 | 120920 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001681 | HB-other Transcription_Regulator(from PlantTFDB) tRNA_3'-trailer_cleavage endoribonuclease activity, producing 5'-phosphomonoesters, regulation of transcription, DNA-dependent, sequence-specific DNA binding, RNA_transport sequence-specific DNA binding transcription factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13691.5 | Lactamase_B_4 | 126 | 168 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | ribonuclease Z [EC:3.1.26.11] | ko03013 | K00784 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
| GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters |
| GO:0042779 | tRNA 3'-trailer cleavage |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.