PH01001859G0270's details annotation
1.Annotation
ICBR annotation: BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
Blast result AT5G66560 : 4.30E-91
Blast annotation: Phototropic-responsive NPH3 family protein
2.Location
Scaffold: PH01001859
Strand: +
| Region | Start | End |
| gene | 238632 | 240998 |
| mRNA | 238632 | 240998 |
| exon | 238632 | 239442 |
| exon | 239537 | 239606 |
| exon | 239704 | 240998 |
| CDS | 239402 | 239442 |
| CDS | 239537 | 239606 |
| CDS | 239704 | 240963 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000357 | RNA_degradation steroid biosynthetic process, S-adenosylmethionine-dependent methyltransferase activity, |
| coexpression network | CFinderM000878 | Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system Phagosome |
| coexpression network | CFinderM001489 | Steroid_hormone_biosynthesis Fatty_acid_elongation Biosynthesis_of_unsaturated_fatty_acids RNA_degradation |
| coexpression network | CFinderM001576 | RNA_degradation photosystem II, extrinsic to membrane, oxygen evolving complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03000.13 | NPH3 | 214 | 455 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.