PH01001897G0050's details annotation
1.Annotation
ICBR annotation: ribosomal protein L7Ae, putative, expressed
Blast result AT1G36240 : 2.40E-48
Blast annotation: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
2.Location
Scaffold: PH01001897
Strand: -
| Region | Start | End |
| gene | 13463 | 16944 |
| mRNA | 13463 | 16944 |
| exon | 13463 | 13646 |
| exon | 13764 | 13832 |
| exon | 14163 | 14264 |
| exon | 16538 | 16944 |
| CDS | 13606 | 13646 |
| CDS | 13764 | 13832 |
| CDS | 14163 | 14264 |
| CDS | 16538 | 16658 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001635 | Ribosome translation, Ribosome intracellular, C3H Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01248.25 | Ribosomal_L7Ae | 12 | 105 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L30e | ko03011 | K02908 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.