Annotation of co-expression genes

PH01001908G0090's details annotation

1.Annotation

ICBR annotation: transketolase, putative, expressed

Blast result AT1G30120 : 5.00E-167
Blast annotation: pyruvate dehydrogenase E1 beta

2.Location

Scaffold: PH01001908
Strand: +

RegionStartEnd
gene5333358704
mRNA5333358704
exon5333353476
exon5355353614
exon5374253785
exon5740458704
CDS5339553476
CDS5355353614
CDS5374253785
CDS5740458376

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02779.23Transket_pyr77247
PF02780.19Transketolase_C263384

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesispyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]ko00010K00162
Citrate cycle (TCA cycle)pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]ko00020K00162
Pyruvate metabolismpyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]ko00620K00162
Butanoate metabolismpyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]ko00650K00162

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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