PH01001939G0120's details annotation
1.Annotation
ICBR annotation: gar2, putative, expressed
Blast result AT3G18610 : 1.60E-53
Blast annotation: nucleolin like 2
2.Location
Scaffold: PH01001939
Strand: +
| Region | Start | End |
| gene | 62441 | 75696 |
| mRNA | 62441 | 75696 |
| exon | 62441 | 62808 |
| exon | 63305 | 63385 |
| exon | 63464 | 63577 |
| exon | 63919 | 64020 |
| exon | 64208 | 64297 |
| exon | 64384 | 64512 |
| exon | 64603 | 64731 |
| exon | 64824 | 64919 |
| exon | 65183 | 65319 |
| exon | 65354 | 65471 |
| exon | 65906 | 65994 |
| exon | 66090 | 66180 |
| exon | 66250 | 66341 |
| exon | 66969 | 67324 |
| exon | 69347 | 70097 |
| exon | 70223 | 70315 |
| exon | 70751 | 70793 |
| exon | 71140 | 71223 |
| exon | 71408 | 71572 |
| exon | 72275 | 72418 |
| exon | 72853 | 72958 |
| exon | 73919 | 75696 |
| CDS | 62554 | 62808 |
| CDS | 63305 | 63385 |
| CDS | 63464 | 63577 |
| CDS | 63919 | 64020 |
| CDS | 64208 | 64297 |
| CDS | 64384 | 64512 |
| CDS | 64603 | 64731 |
| CDS | 64824 | 64919 |
| CDS | 65183 | 65319 |
| CDS | 65354 | 65471 |
| CDS | 65906 | 65994 |
| CDS | 66090 | 66180 |
| CDS | 66250 | 66341 |
| CDS | 66969 | 67324 |
| CDS | 69347 | 70097 |
| CDS | 70223 | 70315 |
| CDS | 70751 | 70793 |
| CDS | 71140 | 71223 |
| CDS | 71408 | 71572 |
| CDS | 72275 | 72418 |
| CDS | 72853 | 72958 |
| CDS | 73919 | 74373 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001282 | protein methylation, intracellular, methyltransferase activity, nucleotide binding, nucleic acid binding, IWS1 Transcription_Regulator(from iTAK) ribosome biogenesis, transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 379 | 432 |
| PF00076.21 | RRM_1 | 480 | 536 |
| PF14432.5 | DYW_deaminase | 1105 | 1228 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.