PH01001939G0270's details annotation
1.Annotation
ICBR annotation: aconitate hydratase protein, putative, expressed
Blast result AT2G05710 : 0.00E+00
Blast annotation: aconitase 3
2.Location
Scaffold: PH01001939
Strand: +
| Region | Start | End |
| gene | 168042 | 178687 |
| mRNA | 168042 | 178687 |
| exon | 168042 | 168288 |
| exon | 169688 | 169792 |
| exon | 170241 | 170401 |
| exon | 170477 | 170569 |
| exon | 170770 | 170955 |
| exon | 171069 | 171230 |
| exon | 171590 | 171734 |
| exon | 171827 | 171969 |
| exon | 172514 | 172570 |
| exon | 172841 | 172891 |
| exon | 173266 | 173333 |
| exon | 174418 | 174511 |
| exon | 174598 | 174783 |
| exon | 174872 | 174939 |
| exon | 175039 | 175157 |
| exon | 175235 | 175356 |
| exon | 175494 | 175592 |
| exon | 177396 | 177875 |
| exon | 177972 | 178070 |
| exon | 178155 | 178397 |
| exon | 178480 | 178687 |
| CDS | 168276 | 168288 |
| CDS | 169688 | 169792 |
| CDS | 170241 | 170401 |
| CDS | 170477 | 170569 |
| CDS | 170770 | 170955 |
| CDS | 171069 | 171230 |
| CDS | 171590 | 171734 |
| CDS | 171827 | 171969 |
| CDS | 172514 | 172570 |
| CDS | 172841 | 172891 |
| CDS | 173266 | 173333 |
| CDS | 174418 | 174511 |
| CDS | 174598 | 174783 |
| CDS | 174872 | 174939 |
| CDS | 175039 | 175157 |
| CDS | 175235 | 175356 |
| CDS | 175494 | 175592 |
| CDS | 177396 | 177875 |
| CDS | 177972 | 178070 |
| CDS | 178155 | 178397 |
| CDS | 178480 | 178581 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001121 | HB-other Transcription_Regulator(from PlantTFDB) transcription_regulatory_region_sequence-specific_DNA_binding HD-ZIP Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, NAC Transcription_Regulator(from PlantTFDB) DNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, Rab GTPase activator activity, Glyoxylate_and_dicarboxylate_metabolism Citrate_cycle_(TCA_cycle) Lysine_biosynthesis Carbon_fixation_pathways_in_prokaryotes regulation of Rab GTPase activity, nucleus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00330.19 | Aconitase | 68 | 355 |
| PF00330.19 | Aconitase | 394 | 590 |
| PF00694.18 | Aconitase_C | 719 | 847 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00020 | K01681 |
| Glyoxylate and dicarboxylate metabolism | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00630 | K01681 |
| Carbon fixation pathways in prokaryotes | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00720 | K01681 |
| Lysine biosynthesis | aconitate hydratase 1 / homoaconitase [EC:4.2.1.3;EC:4.2.1.-] | ko00300 | K01681 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.