Annotation of co-expression genes

PH01001976G0230's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolases family 16, putative

Blast result AT4G25810 : 1.40E-83
Blast annotation: xyloglucan endotransglycosylase 6

2.Location

Scaffold: PH01001976
Strand: -

RegionStartEnd
gene126253130663
mRNA126253130663
exon126253127466
exon128853129046
exon129988130663
CDS127139127466
CDS128853129046
CDS129988130272

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000178cellular glucan metabolic process,
xyloglucan:xyloglucosyl transferase activity,
cell wall,
apoplast,
GH16 Glycoside_Hydrolases
WRKY Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH16

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00722.20Glyco_hydro_1632211
PF06955.11XET_C241286

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005618cell wall
GO:0005975carbohydrate metabolic process
GO:0006073cellular glucan metabolic process
GO:0016762xyloglucan:xyloglucosyl transferase activity
GO:0048046apoplast

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.