Annotation of co-expression genes

PH01001998G0220's details annotation

1.Annotation

ICBR annotation: bZIP transcription factor domain containing protein, expressed

Blast result AT2G40950 : 1.60E-38
Blast annotation: Basic-leucine zipper (bZIP) transcription factor family protein

2.Location

Scaffold: PH01001998
Strand: +

RegionStartEnd
gene155871158144
mRNA155871158144
exon155871157563
exon157619158144
CDS156090157563
CDS157619157638

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000765protein import into nucleus,
nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
Spliceosome
coexpression networkCFinderM000934protein import into nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
RNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)bZIP
Transcription_Regulator(from PlantTFDB)bZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00170.20bZIP_1168230

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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