Annotation of co-expression genes

PH01002022G0260's details annotation

1.Annotation

ICBR annotation: BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed

Blast result AT1G74360 : 0.00E+00
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01002022
Strand: -

RegionStartEnd
gene189242194379
mRNA189242194379
exon189242191789
exon192024192689
exon192836192876
exon193537194379
CDS189365191789
CDS192024192689
CDS192836192876
CDS193537193611

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000192protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_869128
PF13516.5LRR_6186202
PF13855.5LRR_8309369
PF00069.24Pkinase7731041

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.