PH01002027G0390's details annotation
1.Annotation
ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed
Blast result AT3G25140 : 0.00E+00
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01002027
Strand: -
| Region | Start | End |
| gene | 244629 | 250188 |
| mRNA | 244629 | 250188 |
| exon | 244629 | 245955 |
| exon | 246444 | 246968 |
| exon | 248568 | 250188 |
| CDS | 245677 | 245955 |
| CDS | 246444 | 246968 |
| CDS | 248568 | 249323 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001504 | Amino_sugar_and_nucleotide_sugar_metabolism GT8 GlycosylTransferases DNA metabolic process, cellular metabolic process, Nucleotide_excision_repair Starch_and_sucrose_metabolism |
| coexpression network | CFinderM001716 | Amino_sugar_and_nucleotide_sugar_metabolism cellular metabolic process, GT8 GlycosylTransferases coenzyme binding, copper ion transport, copper-transporting_ATPase_activity Starch_and_sucrose_metabolism Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT8 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 181 | 491 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00500 | K13648 |
| Amino sugar and nucleotide sugar metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00520 | K13648 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.