PH01002043G0150's details annotation
1.Annotation
ICBR annotation: protein phosphotase protein, putative, expressed
Blast result AT1G47380 : 1.00E-132
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01002043
Strand: -
| Region | Start | End |
| gene | 88046 | 95108 |
| mRNA | 88046 | 95108 |
| exon | 88046 | 88785 |
| exon | 88858 | 88983 |
| exon | 89523 | 89630 |
| exon | 90295 | 90358 |
| exon | 90443 | 90593 |
| exon | 92545 | 92716 |
| exon | 93151 | 95108 |
| CDS | 88534 | 88785 |
| CDS | 88858 | 88983 |
| CDS | 89523 | 89630 |
| CDS | 90295 | 90358 |
| CDS | 90443 | 90593 |
| CDS | 92545 | 92716 |
| CDS | 93151 | 93390 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 71 | 291 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.