PH01002049G0320's details annotation
1.Annotation
ICBR annotation: uncharacterized Cys-rich domain containing protein, putative, expressed
Blast result AT2G45010 : 4.60E-98
Blast annotation: PLAC8 family protein
2.Location
Scaffold: PH01002049
Strand: +
| Region | Start | End |
| gene | 203610 | 207962 |
| mRNA | 203610 | 207962 |
| exon | 203610 | 204034 |
| exon | 204130 | 204322 |
| exon | 206068 | 206333 |
| exon | 206977 | 207962 |
| CDS | 203915 | 204034 |
| CDS | 204130 | 204322 |
| CDS | 206068 | 206333 |
| CDS | 206977 | 207168 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000226 | DDT Transcription_Regulator(from iTAK) glycolysis, fructose-bisphosphate aldolase activity, Methane_metabolism Carbon_fixation_in_photosynthetic_organisms Pentose_phosphate_pathway Fructose_and_mannose_metabolism Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM000519 | LIM Transcription_Regulator(from iTAK) mitochondrial inner membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04749.16 | PLAC8 | 65 | 191 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.