PH01002057G0390's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT5G46800 : 5.00E-113
Blast annotation: Mitochondrial substrate carrier family protein
2.Location
Scaffold: PH01002057
Strand: -
| Region | Start | End |
| gene | 259512 | 263276 |
| mRNA | 259512 | 263276 |
| exon | 259512 | 260966 |
| exon | 261709 | 263276 |
| CDS | 260468 | 260966 |
| CDS | 261709 | 262100 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK) ethylene mediated signaling pathway, endoplasmic reticulum membrane, Plant_hormone_signal_transduction protein histidine kinase activity, Others Transcription_Regulator(from iTAK) two-component sensor activity, protein tyrosine kinase activity, two-component signal transduction system (phosphorelay), EIL Transcription_Regulator(from PlantTFDB) two-component response regulator activity, signal transducer activity, sulfate assimilation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 4 | 94 |
| PF00153.26 | Mito_carr | 103 | 199 |
| PF00153.26 | Mito_carr | 213 | 295 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.